PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Vang02g15530.1
Common NameLR48_Vigan10g254900
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Phaseoleae; Vigna
Family ZF-HD
Protein Properties Length: 315aa    MW: 34025.6 Da    PI: 8.7551
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Vang02g15530.1genomeSNUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer33.59.8e-11821014059
     ZF-HD_dimer  40 alkCaACgCHRnFHRrevee 59 
                     ++kCaACgCHRnFHRre+ee
  Vang02g15530.1  82 SIKCAACGCHRNFHRREPEE 101
                     89**************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-967107IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047702.1E-78299IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.52E-19165236IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.606.5E-30167237IPR009057Homeodomain-like
TIGRFAMsTIGR015653.1E-27175232IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MEIITPTPPP TAVTTTNAAP KSPELDIETP TRIHQAAGNP NPSPKPVSFS NGVLKRHHAN  60
NRTAAPVVYK ECLKNHVASL GSIKCAACGC HRNFHRREPE EPPISPATHH VLEYQPHHRH  120
HPPPPPPHRS PNSSSPPPIS SYPSAPHMLL ALSSGGGLSV APENTAAPAL AHHSRKRFRT  180
KFTQEQKEKM HEFADKVGWK MQKRDENMVM EFCSEVGVDR GVLKVWMHNN KNTFAKKDNL  240
NGSPANGTNH VASPNKATVR SNVNGLEQEH GGGINGNSDH DHNHNHNLGS SHDVNEYDND  300
SGTNGGGTNG SSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A5e-221742331675ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0150440.0AP015044.1 Vigna angularis var. angularis DNA, chromosome 11, almost complete sequence, cultivar: Shumari.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_014511481.11e-170PREDICTED: zinc-finger homeodomain protein 9
SwissprotQ9LHF07e-61ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A0L9VP281e-180A0A0L9VP28_PHAAN; Uncharacterized protein
TrEMBLA0A0S3T8B11e-180A0A0S3T8B1_PHAAN; Uncharacterized protein
STRINGGLYMA13G05420.11e-120(Glycine max)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.17e-56homeobox protein 34
Publications ? help Back to Top
  1. Yang K, et al.
    Genome sequencing of adzuki bean (Vigna angularis) provides insight into high starch and low fat accumulation and domestication.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(43): p. 13213-8
    [PMID:26460024]